Scaffold JGI25910J50241_10000512

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10000512
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12990
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F004451	Metagenome / Metatranscriptome	437	N
F008079	Metagenome / Metatranscriptome	339	Y
F012974	Metagenome / Metatranscriptome	275	N
F015420	Metagenome / Metatranscriptome	255	Y
F019928	Metagenome / Metatranscriptome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_100005121	F019928	N/A	MKHSGVLSIIVFSTGYLTGIALVCEPAIYLKLAGATVIGYLSFILALQWEGEE*
JGI25910J50241_1000051210	F003299	N/A	MKIYKVVYKTFDYWNGPVKLVTRIVEAYDADHVKQLIQKNDDLILLIEEV*
JGI25910J50241_1000051223	F012974	N/A	MFTEAEQVIIQQVFNLPEKEQSYKIHLLKLKPIKVRVTGTPDKECFCSGVRRKIWYKDFIQWYETYT*
JGI25910J50241_1000051224	F004451	AGGA	MRPILDNYISAHYKEIRKYTNYFLVRMKSTISADAVINNSFLYLCNIDIEVTDPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPIVMDDDTDLYDKIREDMQYQNNMAVIETYRGRITDRIKLIVFQCYFDKGYSTARAMAEYFRIPVTSAHYWIQEIKNDLKQLRDEN*
JGI25910J50241_1000051225	F008079	N/A	MKIKNEFIGVKVSHKGNNVNVSTENYTFCESIGLGYMFEEPTVSEPKVIKYKAVKGPIPAPVVDEPTVESEEDVTEAE*
JGI25910J50241_100005124	F001808	N/A	MRYLAIILLLSSCSAQYHLNKAIKKGYTCEETGDTIRITTLDSIPVIINNDIIWEKFITTKDTIIKYRTVYVPKTRQEKRIEYKLKVKTIYKDRIVEKAKAKASQPRPRGNLSLLFVGVGIGLLLSYLFKFVKDKYLL*
JGI25910J50241_100005127	F015420	N/A	MKRLIKYFTPVGEEQIAFAKALMVVVTAIISILFLFPLLNLLS*
JGI25910J50241_100005128	F004234	N/A	MNFINLFKRDNTYFSNWTTDYDSDVYIAGTIEPFTYNASETDDGDMSLFILSDANLNLLKSKL*
JGI25910J50241_100005129	F003327	N/A	MTEFTQLAIKVQDEIANGDYTHQKYLRFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNNDNEDI*