Scaffold JGI25910J50241_10000022

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10000022
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45426
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (10.26%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014501	Metagenome / Metatranscriptome	262	Y
F018151	Metagenome	236	Y
F026552	Metagenome	197	N
F036695	Metagenome	169	N
F049442	Metagenome	146	N
F055435	Metagenome / Metatranscriptome	138	N
F105162	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_1000002219	F018151	N/A	MKRLIILIFILMTISAKAQTNYNNGRTCDFILVQGDTSLITGFNGLDKKDFGIYLGVKYGGLFSGSIFYTPFNAINRLGISKGYMKDGIRLSGGIKITPKGINNFDLRPEFGVSLHPIRLISQDPYSFDIVLSFYKSTTTRFGFGISFPIQYRNNFRL*
JGI25910J50241_1000002231	F105162	N/A	MGYKFSQTVKCNHNEKLNEDVFIQSKWELPHLEYSIEDIVRMEDNGDIXSYFQDVYCTPFFCWDGAMEVVDKIELTPCNDGFPFVILSGKYFSIEIDGELFVIEREHSDNKLEILEELVYEFLNYYYTNVEKNN*
JGI25910J50241_1000002254	F049442	N/A	MNKKNLEQGLTKLLKTFFTKKYDRDFSDLTVVLDEYEEDADDVDDEGNWSSAESYYFTVYSNDFDGLPIQKLYNLARELFGNIIGNSNWVDIEFKKYEN*
JGI25910J50241_1000002255	F026552	N/A	MELTNVIEKLMNRDSFLNLLENDIIEKFEVNVSPFESKILVIKMFLNITKDEFLGTGESTPRLSEWEVRGKLWEDYNLDPAWWHAYIIPNKILKPLVGKDYFIKILLFVVDKNGIHLFTEN*
JGI25910J50241_1000002257	F036695	N/A	MEMTYTDKAILELLNNPKIIPPNDIIHEYTVASHNDVELLVIKVILNIDVNNKGQRGDGERMLYENNFDAYKLSETIVKKILRPLGLLKSISWGVLIVIDASGNRLIEHSMINVVMVKD*
JGI25910J50241_1000002277	F014501	N/A	MIQLYTELGRGGFQWSRESRLQPALYFFYKVLGNVKGMLYLCIMMKLMESPTQIKRLNKIMKDRIITCGVVSYYYENLKGYYSLHANKGDNYTTPHLYLKFNITECTGKRQYGDKGTYPIFRGHRRVRGINSSIIYNITQDGVKXFLKHFGVKYYELGKTMFVWPIQK*
JGI25910J50241_1000002278	F055435	N/A	PNRGNVLPEAIVWFEKGKKGFVNKPLSQNVWMMVXCDLRPLHXLLHKHFHLNEGDFNITRTTLSSXAYETISEWAKQT*