Scaffold JGI26470J50227_1001637

Overview

Basic Information

• Taxon OID: 3300003375
• Scaffold ID: JGI26470J50227_1001637
• Source Dataset Name: Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7762
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Trout Bog Lake, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0409
  • Long. (^o): -89.686
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019426	Metagenome	229	Y
F028070	Metagenome / Metatranscriptome	192	Y
F041564	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26470J50227_10016372	F041564	AGG	LEYDPFDEEHQAIMEYLIAEGAAILEGMDENGEPVYKFDMEVLEEVMPELHAAMQQDMDQVLVDLYQKGLIEVSYDENLNALMSISEQGKVALAEAGFDLDDIEDEF*
JGI26470J50227_10016375	F019426	N/A	MYTRTGNRPCVFRKEIMRVIVFGTKDWTDYNDLMRQVTLLIEDNKHFYPDDKEYVFVHKGMQGAENMITEYIGKTERFLRQKGYKIKEELVRDKSSFSDVTMIESDVSIALVFGDSPRNRQCMKVMDAMEIPYRYFVK*
JGI26470J50227_10016379	F028070	AGAAG	MASIKYTVEMAKKIREIKVPVKGLKMEIRARPNYLAITIFEDNVMEYNESQRMQLMEYLLLVRKLIMAYGTPCEIEGIKYTNEKQ*