Scaffold JGI26470J50227_1000458

Overview

Basic Information

• Taxon OID: 3300003375
• Scaffold ID: JGI26470J50227_1000458
• Source Dataset Name: Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16822
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (51.52%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Trout Bog Lake, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0409
  • Long. (^o): -89.686
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F023777	Metagenome / Metatranscriptome	208	Y
F030333	Metagenome	185	Y
F032569	Metagenome	179	Y
F034448	Metagenome	174	Y
F040990	Metagenome	160	Y
F104347	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26470J50227_100045811	F040990	N/A	MNYYYEIDPGYDGTIFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSTKVWLENANGVYLIKPQWDARRHRVDKHEFTIVKLRAKTIKWWSGE*
JGI26470J50227_100045812	F015302	GGTGG	VSKDEYYANTAARLDTIIGGDTQHFLRLQRVKNEYDELARAVPVGQGFLTFDDYVREYYGVKLQFDGDNVTLAYSIVDEKKHLMFILKFNR*
JGI26470J50227_100045813	F034448	N/A	MHVNNYTLPRPPEKALNQCHAVYINDPAFRMWAMKKYCRENNLSLMWSELVETSDVSAYFDEAAAFYFIDPADATFFTLKFK*
JGI26470J50227_100045814	F030333	N/A	MVGERNPQLTVSVKTSSHYTECEPWCMCNIGNWNVTWWRDFPDIAMSVALGQGPQPETYWFANERDALMFRLRFQ*
JGI26470J50227_100045820	F023777	AGGAG	MAVKSWFLSVVDTATHKPVIHKMFFTAPEMNKFIKEQNILEEYKKPQYYIVKENY*
JGI26470J50227_100045823	F104347	GGA	MDSFRQWYLNNQKEITWFLIGFLTLSGFQDLGQGNYVGAAISFGLAYINYKLN*
JGI26470J50227_10004589	F032569	N/A	MIRVNVLNDAFNRAFWNAKRTLPVEHLETPRQYGRRCREAFRYRVDPNSPRGAFDTVYYIFDNDEDYTWFMLRWG*