Scaffold JGI26470J50227_1000196

Overview

Basic Information

• Taxon OID: 3300003375
• Scaffold ID: JGI26470J50227_1000196
• Source Dataset Name: Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27510
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (69.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Trout Bog Lake, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0409
  • Long. (^o): -89.686
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008677	Metagenome	329	Y
F015057	Metagenome	257	Y
F056283	Metagenome / Metatranscriptome	137	Y
F074332	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26470J50227_100019615	F074332	AGGAG	MAYDHLAKLDVEGLQGYFSDFHKDFYGSRPRWGTPEQWIDRAWLESNIINIHTAMDRMKETVEGRKELRANGWVIDEADYDDVIDPKEYAEWSADADARAYGEMI*
JGI26470J50227_100019616	F056283	N/A	MYSENKGADMFETLVDQLVKVTLTPEPVKTEFYNGTLFVSKITERQARSIFHVLSQTLGTGTVQVSPIGDSGEYAFDFVAEKQHQNTEDFSPFATVNS*
JGI26470J50227_100019620	F008677	AGG	MIVEKDRVYTFKLTNADEIVGKIVDITDESYIVAQPLSAVPTEKGIQLIFTVFTGDPKENATINKTAIAMICQTREEVGDHYLEATTGLKPVRKPSIIMG*
JGI26470J50227_10001963	F015057	AGGCGG	VNAITLLTNTIDSLWYWTYGIIAGWGLTFTLIVAALIVLLIRTINLQRRVDRLENRLIHAERDYNLSITQHKSK*