Scaffold JGI26470J50227_1000154

Overview

Basic Information

• Taxon OID: 3300003375
• Scaffold ID: JGI26470J50227_1000154
• Source Dataset Name: Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32024
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (90.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Trout Bog Lake, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0409
  • Long. (^o): -89.686
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005167	Metagenome / Metatranscriptome	410	Y
F009741	Metagenome / Metatranscriptome	313	Y
F014843	Metagenome / Metatranscriptome	259	Y
F019092	Metagenome / Metatranscriptome	231	Y
F025484	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26470J50227_100015423	F014843	AGG	VNILLSLDGVLSSDTGEPIRAGVALYYALNSSNRVAIVTSRTKEDAEHWLFSHGVINYDDLIDFSYNLEGEDLRKRQFTIARSHAPVELYVDADPSMCAWVFEHQKVPTLLVSHPSYAKVENRPDAPSKVRKWSDIEEAVTRVNIARTLDYKKPDPELGEWGD*
JGI26470J50227_100015426	F019092	AGGAG	MSNVPILGEKKMDNEPMFRLLFCLVCQTLEELPPYDGEPELDHLLAIACEQHVFPSGEPHKGKLFVLPLRAWAKPESKKEIIRQIKGGGSAGLDELDDKFYESRSTFMEDAMTCYVRHNKPKDGCDDWQHKSKLLIPNTVKERKAEGMARYQDEAGPKTYLCNFCPVSIAVNQRKQKLLGGRP*
JGI26470J50227_100015430	F005167	AGGA	MAVNSSRSMNKSLDEGTTDGKYRKARPDTELIPGLGDEATINNRQSLHPFYGYGFLTSEYPNKVNPGK*
JGI26470J50227_100015431	F025484	GGAGG	MDDGSGGLILDLQARQIAENAIRYNGSAPCPTCGVIMNPVEFMNNRGHCLSCLTQKKMSRMKGKMA*
JGI26470J50227_100015432	F009741	GGCGG	MTQTFDGNYDYTKPWRAPVQPDQVAKQYTYSGPWATNMERLTQQALMVMTIPGADLQQMVRPPLPQIRLFPDRFGYGDRSQPGIEDIVTIDRNYTEPRVSWYSGGVAGYSAAARNDLGGI