Scaffold JGI25407J50210_10003771

Overview

Basic Information

• Taxon OID: 3300003373
• Scaffold ID: JGI25407J50210_10003771
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3658
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024928	Metagenome	204	N
F073736	Metagenome	120	Y
F080641	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25407J50210_100037713	F073736	N/A	MPGTDRPPRPGRDPGGRVAYLPPRAARARKLILRSQLGRGWIVASALFGLVILAAGVLFLTRDGHPGPPWVRVAPLSSLPAGTVTEVAGPAGQVVVVDRRGGELRAFLAPPGSCPVRVAGSGFARPCDGQRWDAEGGPASDLRDGEEAPPPLRRVAAAFADGDLYVDPRAN*
JGI25407J50210_100037714	F024928	GAGG	VIARVLCATAQSEQAAATMAELWGEQVGRFERTAPGFQGAVLLREGANLLAISCWDGRGPAEAALAPLLDRVASSRLDALLAKPLSCRFRTL*
JGI25407J50210_100037715	F080641	AGG	VTVRALADLGQGARGRIVELRLPPGRRTLPGSPLQPGATVYVAEATGGRWLHVRIDYREYSIPLGVAEGVLIEVPETAQPPSAGDAYAVLVSRLDRRSWRVRVVDRASGVVARSEWFEDEAEARRRHGEVTADAAALEAAAFRSRYRLP*