Scaffold JGI26347J50199_1001239

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26347J50199_1001239

Scaffold JGI26347J50199_1001239

Overview

Basic Information
Taxon OID	3300003350 Open in IMG/M
Scaffold ID	JGI26347J50199_1001239 Open in IMG/M
Source Dataset Name	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1954
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084158	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26347J50199_10012391	F084158	GGA	MPNRVRSKKPIRFRNRGDSPLSPATPDKRELLLKLAQELQEMMIESMEGIGVSRKEQMLSYRRASRGLGGKERPSAPLIDRISGIADLLSSWRRDRRYLQADGSPRVLPIQGNGVSLESLGKKFVPDMSLSEVLVAVTRHGEATVYQRDKVALVGGSVLVTPKTAEMALALLVSRIRRYSNTVLHNVSLPEGSKGHGRFERQVFGVLSERQFHAYAQAMRSQLQDLCDRAESGLELAADKKGGKRKACGIGIFVFRDD*

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