Scaffold JGI26081J50195

Basic Information
Taxon OID	3300003346 Open in IMG/M
Scaffold ID	JGI26081J50195_1003132 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003346 Open in IMG/M

Scaffold ID

JGI26081J50195_1003132 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5512
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5512

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (92.86%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025174	Metagenome / Metatranscriptome	203	N
F033361	Metagenome / Metatranscriptome	177	Y
F100708	Metagenome / Metatranscriptome	102	Y
F102852	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26081J50195_100313213	F102852	AGGAG	MRNHIEKTFGFDASLNREMEIDNYSPRMATELVALQKRIKKSHPFAKFRHTADDALAIHLSPQSMCFDAKVSWDTDAYIVMTVSTXREREISYDDTDKYGIAYSDRRFTSITKTLARATKLIKDTKSATGERVLEKVMQGTIPPYVRGLKQAQEKLDELQSRVFSSMRNSLTSDALLEYSLAAMERRPVRADIRHQVEDCTNKYLEAKKDLGASIAACDGLQTLSIYKLKNIDKVFFHYRDTTAGEMQRIKHVDDVNKLPQEVLAKLSVLQATGIDAMDSVGYSYETKVLTSIGCVTRDAYDYDFVEDAMCVYISPETMTEVEALVGY*
JGI26081J50195_10031322	F100708	AGG	VTTTKIDVQTKEKREALSAEIAKQVEEFLAKGGTVTQCPPRAFTKTEGYAKKFAGSQFDSLTDPSNRDVGATRPTKNKGGSE*
JGI26081J50195_10031325	F025174	GAGG	MSYFTDPMAALEEAEYIAKEEKRTMCVVEVEPNMIVVVSKKAALELGGIILETCVPFEENHNIYD*
JGI26081J50195_10031326	F033361	AGGAG	MLIKCNAADHLYLIKDDPVRPDLFEGNIKRFEDPFHVYAEVNDETGEIAAVVCVIVCKFVPQDELQIQAVAEGRLTEIEEKLEEREKIYGELGTVLCPYSIWSYQRGHGRKLINNLLEAAAIIHPEVDAVITMSPHTATAMKFHLDNGADIFGTNAECVNYEYEVPDVILH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI26081J50195_1003132

Overview

Ecosystem & Geography

Associated Families

Sequences