Scaffold JGI26081J50195

Basic Information
Taxon OID	3300003346 Open in IMG/M
Scaffold ID	JGI26081J50195_1000875 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003346 Open in IMG/M

Scaffold ID

JGI26081J50195_1000875 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12327
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (89.29%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12327

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (89.29%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004646	Metagenome / Metatranscriptome	429	Y
F025259	Metagenome / Metatranscriptome	202	Y
F028770	Metagenome / Metatranscriptome	190	N
F035551	Metagenome / Metatranscriptome	172	Y
F050298	Metagenome / Metatranscriptome	145	Y
F065666	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26081J50195_100087512	F028770	N/A	MVGTLGVIMVCMSALAEHCQVLTSPFIFSTVEECQASTVAEARNIKEMYSHAAITPNCVELMYNGEPA*
JGI26081J50195_100087518	F004646	GGAGG	MIYAIADVPHEDYDNYDMLNKLFHALSPHGWENSTWXXDTCPSLQKEERHGNVCRIFVDYLXPDMREDPSWALLAYTVEDREGYLVLQEGFDNVDKLIIYLTEKVKP*
JGI26081J50195_100087520	F065666	AGGAG	MTREEFFNALWQMVKDTDVDYQELLDDDGEGGVYIRFTNVIVEEEMA*
JGI26081J50195_100087521	F050298	AGGAG	MTKTIEKITDLGYGWTGTLYSDGTMRVQGDLQESDCIDLPKASVDRLSRIFREIQNEAAAHQ*
JGI26081J50195_100087523	F035551	GAG	MKLRELTQALASGSDVRWGHDGYHVKWENLPDGPAITITCTANGFGGAMAVSEMKDCYIKETTQ*
JGI26081J50195_100087526	F025259	GAG	MIPSKAIKVYASAGQPDGEYVTTVFTPHDANQARIKLFKRTGVRRVTFKTPTGEELSFSNDRVSKL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI26081J50195_1000875

Overview

Ecosystem & Geography

Associated Families

Sequences