Scaffold JGI26081J50195_1000343

Overview

Basic Information

• Taxon OID: 3300003346
• Scaffold ID: JGI26081J50195_1000343
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20388
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (85.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007589	Metagenome / Metatranscriptome	348	Y
F067765	Metagenome / Metatranscriptome	125	N
F074686	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26081J50195_100034318	F007589	AGGA	MKSFNEFMTEQKKVKWNKVPDGYDGKKKVFKHVTSDGKFEIRLSGMDSMKMNKDGSQKVMPTVFDKSGNTPKHPVIAYSNVDKAKAEVQRWIDDH*
JGI26081J50195_100034322	F074686	AGGAG	MKSDYVVVDTISVFKQRYIIPREEVQRFNEEVKLTDKLAKLWAQESVESEEVKEFSQRWLGETVTNVDFAGTEKVLQFFKEDNEQLSEEWSQAQQLDYINDWKDKTPKR*
JGI26081J50195_10003433	F067765	AGGA	MSTNSKGKLIPFPKIHSNPPIDEVSVGERIREYKESYSSELAEIIWENVLGEMARAGCDFEDNMELYFPSMILIFESIRSLHLQTMNEEHQLQAYAANNVIVDADENAISGGLKKNLEETIDIDEDV*