Scaffold JGI26081J50195_1000006

Overview

Basic Information

• Taxon OID: 3300003346
• Scaffold ID: JGI26081J50195_1000006
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80779
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (39.51%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017811	Metagenome / Metatranscriptome	238	Y
F043435	Metagenome / Metatranscriptome	156	Y
F061292	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26081J50195_10000064	F043435	GAG	MKNLKTYQALTKKATARYGERTRMPNLNKVSKLLTELGIENSCYESSCEKWSSAAGYRYYTSGGSRTYTGFWFKVPQINMNIDSTDTYYSWNTKHYAEELVNLIDNHQK*
JGI26081J50195_100000649	F017811	GAG	MSKKYAMLQIDAEIHQMLKEFCKDKGYKMNGLVESLIKEKVSPNAKPLPSNVLKTK*
JGI26081J50195_100000679	F061292	GGA	MNIKTLKNIMKEVNQPNEFIMEPVDLTHPLYWIWRTTTPCRLKTLDSRLSSKRHTDARFDVFVWGGYIAPRDYKFEQIGQYFHIKFIRENFPSTIENSNDPNFGQPWSFEAGDNVKIEGDLEILN*