Scaffold JGI26080J50196_1006042

Overview

Basic Information

• Taxon OID: 3300003345
• Scaffold ID: JGI26080J50196_1006042
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4142
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036486	Metagenome / Metatranscriptome	170	N
F069731	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26080J50196_10060424	F036486	AGGAG	MARTKQYVVYTREFTKGNVNSKIGVFVEEANKYTVNGEVNGGAIKXANLKMSRPTATKXLVDAGYDFNVRVLGTSSLQGAMAMKEQLIDLLAETNKNVINVAA*
JGI26080J50196_10060425	F069731	AGGA	MKISEKQIPVKDAINLAVQAYIQNGKYHREDQYEYVETEDGPSERITVKGNKHLMREMFSQDQILIDPKCDAMVEDIYTHYQGLIFKIMSNQSTDFADNVYKVISKESIGYKELGYLAPLPSLYEHEMARDLFVKEIADSQHVGKVKEKITVRATLHEARYIRSRDFHVYTFISEGNLITHFSQKGINEWATVGVVREGEEYSITFKVKRHGESSFYGCKDTVVNYLKISD*