Scaffold GBSed_10071027

Overview

Basic Information

• Taxon OID: 3300003332
• Scaffold ID: GBSed_10071027
• Source Dataset Name: Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1115
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.01
  • Long. (^o): -111.43
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055335	Metagenome	138	N
F058593	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
GBSed_100710272	F055335	AGGAGG	MRAYDILLFLVCLEATIGFVSSLHIFPADYVDASAVRTPQEWNLQEVENQTVSQSIFDKVMLATDILFKALSMFFNMLVAIIAIYIPLTSVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME*
GBSed_100710273	F058593	N/A	DHYTVILTPTTSSITSSEDYITFNLSYEIGDDEITLSLVYNDSLAQTQNLTFFVYNSTTLLYQQNFTNVSNVSVSYTVPYKAGEEYMWGYSAFHSRFGEMGRSRILRVAWFLDLGISRTYCTWIAIAIILFLTAMFSFTTVKFGYVAIPMMSLIFAYIGWLPNISIIIIALCLGILAYMSKREKEVSV*