Scaffold GBSed_10009928

Overview

Basic Information

• Taxon OID: 3300003332
• Scaffold ID: GBSed_10009928
• Source Dataset Name: Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6387
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.01
  • Long. (^o): -111.43
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F040961	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
GBSed_100099282	F024941	AGGAGG	MAYAFWGRLGLTKGEEYRKLLERAWNLGWSQRRFFREARARGLGYAEKLMREDWHRFGYVESARTYSGKLTQHIFFDEVVRKLHYEEKWSWKEIKEFLNERKEPERWTPETKVKEKIYKSYLSEALPEKADT*
GBSed_100099283	F016235	AGGAGG	MSEEKIPSSPPLFLHKRWSHRRGYQKCVKYIGIDKNNERFGKGFPLCAVIKFRIPVTRYTPRTHEIAKLLATLRLLYGNEYMEELNALAEVEYLRIRRRLKWLTHFGDGLD*
GBSed_100099284	F040961	AGAAGG	MVNAAECKWSEEQAKGLLTFLIAEKKRHERDIHNIERSIQRIKREFNFTDADIAKCEELAWLYVEF*
GBSed_100099285	F024940	GAG	MEREIIHRKIRSIKELREFITDYLIEHSEMRTRAMITANINAVLYEQGWMDALRTIRDLISKEGLLMYRYTESEEVEREEDRNRDTL*
GBSed_100099286	F016098	AGGGGG	MSEERRYVYMRKTRSGKGVRMRDREIVYIASIRSLEAFVQGEREFVAFAKVPYRQIPGENNEADLIYTWCDKCGGSRFFRKISEDKWRCESCGTERTATELIEKVRSILDEGE*