Scaffold GBSed

Basic Information
Taxon OID	3300003332 Open in IMG/M
Scaffold ID	GBSed_10008500 Open in IMG/M
Source Dataset Name	Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003332 Open in IMG/M

Scaffold ID

GBSed_10008500 Open in IMG/M

Source Dataset Name

Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5465
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5465

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (84.62%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location
Location Name	Guyams Basin, Gulf of California, Pacific Ocean
Coordinates	Lat. (^o)	27.01	Long. (^o)	-111.43	Alt. (m)	Depth (m)	2000
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Guyams Basin, Gulf of California, Pacific Ocean

Coordinates

Lat. (^o)

27.01

Long. (^o)

-111.43

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016098	Metagenome	249	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F040961	Metagenome	160	N
F091133	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
GBSed_1000850012	F091133	AGG	MGIFDVWASWTDWLSDWWDAFKDKIWDIKTELWSWVDDIAKYWVARANEWFDILNHAWSEVEDLMENAKSYADDIVTDAILKIDNWVTTFGETVADLWEKIEPYFEPIITPIESAIDTIQNVKIPSLEDITNALNESISNILNWDIPFLNQSVTDLWNEANNIWNEIWNNIWTSLNNAWDDINNIWNTFAEIPADVWNAITVGWEGFTDFLFEQGERFVEKILDIDIPVDDIIKDLERKFKGGEK*
GBSed_100085002	F024941	AGGGGG	MAYAFWRRLGLTKGEQYRQLLERAWNLGWSQRRFFREARARGLGYTEALMREDWHRFGYVESAKTYSGKLTQHIFFDEVVKKLHDEKGWSWKEIKEFLNERKKPERWTPETKVKERIYKSYLSEALPEKADT*
GBSed_100085004	F040961	AGGAGG	MVNAVECRWSEEQAKGLLTFLIAEKKRHERDIHNIDRSIQRIKREFGFTEVDIAKCEELAWLYVEF*
GBSed_100085005	F024940	GAG	MEREIIHKKIRSIKELREFITDYLIEHCEMRTKAMLSQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFEEKKEREEDENRDTF*
GBSed_100085007	F016098	AGGAGG	MSEERRYVYMRKTRSGQGVRIRDGEIVYVASIRSLEAFLQGEQEYVAFAKMPYRRIPNEDNERNLIYTWCDKCGGLRFFRKISEDKWRCEMCGTERSATELIEKVRSILECD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold GBSed_10008500

Overview

Ecosystem & Geography

Associated Families

Sequences