Scaffold GBSed_10008410

Overview

Basic Information

• Taxon OID: 3300003332
• Scaffold ID: GBSed_10008410
• Source Dataset Name: Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9127
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.01
  • Long. (^o): -111.43
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F028993	Metagenome	189	N
F040961	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
GBSed_1000841016	F024940	AGAAGG	MEQEIIHKKIRSIKELREFITDYLIEHSEQRAKALITQNIYAYMYEQGFLDCLKTIRDLLSKEGLLMYRYVFEEEQKRKEDENRDTF*
GBSed_1000841017	F040961	AGGAGG	MVNAVECRWSEEQAKGLLTFLIAEKKRHERDIHNIEKSIQRIKREFGFTDADIAKCEELAWLYVEF*
GBSed_1000841018	F016235	AGGAGG	MSKAKISSSPPLFSHKKGKQRHGYQRCVTFVGIDKNDDYFGEGFPLCAVIKFKRSIYRYTPRTYEIARLLATLKILYGKEYMEELLAWAELEYVRMRREKKWLTLSGDDSD*
GBSed_1000841019	F024941	AGGCGG	MAYAFWGRLGLTKGEEYRKLLERAWNLGWSQRRFFREARIKGLGYAEKLMREDWHRFGYIESARTYEGKLTQHIFFDEVVRKLHYEEKWSWKEIKEFLNERKRPERWTPETKVKERIYKSYLSEALPEKADT*
GBSed_100084102	F028993	GAGG	MADIVEKAVKKRSERIAVSEAYYREGVESPTKDWLEQFKKAKDRRNAGLRRAMEEGLFEAGAERVGTEGWREATLAKADRWLTGATSDVANRRYEERMRDVAECIERAKKAVEGMPTTTIEQRAEKSKRFQIEMSKCMEEKKRRR*
GBSed_100084104	F011723	AGGTGG	MVIYNKGLSRDGSTDEGREILSLTSKEEEKYKVRRIVITDVVLNPLVMEIWLERDRIGENIPLEVASDIAPERVIDLDIEIPIGYTFKVIIKPQTSGNQGSVRGWVEYEIME*
GBSed_100084105	F009582	GAG	MSARRGRREFVGGTGRGVKEARVDVILQRLEENIGGEIKAYPSHVYRYGVNNIFQRTLAYMFGWKTNGEPQKVAVTEGGLVKVAVSGAGFEDIDTLTGVAGNEWSDALEFAWTPNRIRFEALDYPYCAKFSKDGVTWSDAVYVDGETPRDFDINAKYVKVRRHGGTNATYWIIAMR*