Scaffold GBSed_10006286

Overview

Basic Information

• Taxon OID: 3300003332
• Scaffold ID: GBSed_10006286
• Source Dataset Name: Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6757
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.01
  • Long. (^o): -111.43
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F040961	Metagenome	160	N
F067298	Metagenome	125	Y
F091133	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
GBSed_100062861	F009582	AGAAGG	MSVRRGRREFVGGTGRAVKEARVDVVLQRLEENIGNEINAYPSHIYRYGVNNIFQRSLAYLFGWKTNGEPHKVAVSSSGLLKVAISGAGFEEIDALEGTATVTWSDALEFAWTPNRIRFEALDYPYIAKFSKDGVTWSDDIYVDNATPRDFDINAKYIKVRRYGGTDAKYWIIGMR*
GBSed_1000628611	F024940	AGG	MEREIIHKKIRSIKELREFITDHLIEHSEMRTKAMLANNTFVIAYEQGFLDALKTIRDLLSEEGLLMYRYVFEEEQKREEDENRDTF*
GBSed_1000628612	F040961	AGGCGG	MVNAAECRWSEEQAKGLLTFLIAEKKRHERDIHNIERSIQRIKREFSLTDADIAKCEELAWLYVEF*
GBSed_1000628613	F016235	AGGGGG	MSEEKIPSSPPLFSHKKGRHRQGYQRCVEYVGIDKNDDYFGEGYPLCAVIKFRIPVTRYTPRTYEIARLLATLKILYGEEYMEELLAWTELEYVRMRRRAEWVTIFGHDSD*
GBSed_1000628614	F024941	AGGAGG	MGYNFWTRLGLIKGEEYSKLLERAWNLGWSQRRFFREARERGLGYAEALMREDWHRFGYVESARTYSGKLTQHIFFDEVVLKLHDKEGWSWKEIKEFLNERKDPRKWTPETKVKERIYKSYLKEALPEKADT
GBSed_100062862	F067298	GGAGG	MGVITEEDAEKIIRALNLKRRIGELEKQIGELQRRKAKMEQEYENLGINIE*
GBSed_100062865	F091133	GAG	MGIFDVWSSWTDWLSDWWDAFKDKIWDIKTELWSWVDDIAKYWVGRANEFFDILNHAWSEVEDLMEEAKSYADDIVTDAILKIDDWVTTFGETVADLWEKIEPYFEPIITPIENAIDTIQNVKIPSLEDIINVLNESVNNILNWDIPFLNQSVTDLWNEANNIWTEIWDNIWISLNNAWDDINNIWNTFAEIPADIWNGITEGWEGFTDFLFEQGERLIEKILDIDIPIDDIIEELERRFKGGEK*
GBSed_100062869	F016098	AGGCGG	MSEERKYVYMRKTQSGNGVRMRDGETVYIASIRSLEAFLQGEREFVAFAKMPNRKIPNENNERNLIYTWCDKCQGLRFFRKISEDKWRCEMCGTEKTATELIEKVRSILETD*