Scaffold GBSed_10004906

Overview

Basic Information

• Taxon OID: 3300003332
• Scaffold ID: GBSed_10004906
• Source Dataset Name: Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10440
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.01
  • Long. (^o): -111.43
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F028993	Metagenome	189	N

Sequences

Protein ID	Family	RBS	Sequence
GBSed_100049062	F028993	AGGTGG	MVDIVEKAVKKRSERIAVSEAYYKEGVEHPTKDWLEEFKKAKERRNAGLRRAMEEGLFEIGAERVGTDGWQKATLAKADRWLSGATSAEANEKYETAMRDVAECIERARKAVEGMPTTTVEQRAEKSKRFQIEMAKCMEEKRRRR*
GBSed_100049064	F011723	GGAG	MIYNKGLSRENSTNEGTKIFSLISKPEEKVKVRRIVITDVLSNPLIMELWIERDRIGEAIPLEVISDATPERIIDVDAEIPEGHEFSVIIKPQTSGSQGSVRGWVEYEIVG*
GBSed_100049066	F009582	GAGG	MLRNKGRRPFVGGTGREVKEAKVDVVLQRVEEKIGNELKVVPSHVFRYGVNNIFQRSFAYLLGWKSDGEPVKLQASYGGLLKVAISGAGFEEVDVLVGTATATWSATLEFNFVPNRIRFESLDYPYVASLSTDGVKWSEAVYIDEDTPRDFDICAKYIKVMRYGGSNAHYWIIGMR*