Scaffold GBSed_10003479

Overview

Basic Information

• Taxon OID: 3300003332
• Scaffold ID: GBSed_10003479
• Source Dataset Name: Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10246
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.01
  • Long. (^o): -111.43
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096387	Metagenome	104	Y
F105221	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
GBSed_1000347912	F096387	AGGAGG	MAYIREVAIAGIVILEAIALYKGIDGQVLSLVIATIAGIAGYTLRRIRED*
GBSed_1000347916	F105221	GAGG	MVKYIKGFEHTNSGDDEESVVTLTSTEEEKKKINAVVVTHRLSNDTLLVAYLEREKIIDNARIEASPVGNDPYRFNVDIEIPPGETFTVMLKNQSAGSNGGVVGYLEYEITG*