Scaffold GBSed_10003408

Overview

Basic Information

• Taxon OID: 3300003332
• Scaffold ID: GBSed_10003408
• Source Dataset Name: Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10403
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent Sediment → Marine Hydrothermal Vent Sediment Microbial Communities From Guaymas Basin, Gulf Of California

Source Dataset Sampling Location

• Location Name: Guyams Basin, Gulf of California, Pacific Ocean
• Coordinates
  • Lat. (^o): 27.01
  • Long. (^o): -111.43
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F016235	Metagenome	248	Y
F028993	Metagenome	189	N
F040961	Metagenome	160	N
F067298	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
GBSed_1000340817	F040961	AGGTGG	MVNAVECRWSEEQAKGLITFLIAEKKRHEKDIHHIERSIERIKREYGFTDADIAKCEELAWLYVEW*
GBSed_1000340818	F016235	GGAGG	MSNDNIPSTPPLFSHRKWRHRRGYQRCVYYIGIDKNDSYFGEGFPLNCVIKFKIPVYRYAPRTWEVAKLLATLRILYGEEYMEELMAMAEVEYLKMRRDKKWLIHFGENSD*
GBSed_100034082	F028993	AGGTGG	MGKIAEKASRKRAERIAVSETYYKEGVEEPSKDWLTEFKRAKDRRNAGLRRAMDEGLFEKGAERVGTEGWKENTLAKADRWLTGATSEVAQKKYEEAMSDVEECIERARKAVEGMPTTTIEQRAERSKRFQIEMHKCMEEKKRRH*
GBSed_100034085	F009582	N/A	MRERGRRREFVGGTGREVKEARVDVVLQRVEEEIGEEITAYPQHVRRYGVNNIFQRAFAYLLGWQSNGKPIKVGATAGGLLKVAISGAGFEQIDTLEGTAGVEWSSALQFAWTPNRIRFEALDYPYLAKFSTDGVTWSDAVYVDGDMPRDFDINARYVKVRRYGGTNASYYIIGMR*
GBSed_100034086	F067298	AGGAGG	MVVVIREEEAEKIIKARNIKRRIRELDRQIAELQREKAHLLKEYADLGISIE*