Scaffold soilH2_10166691

Overview

Basic Information

• Taxon OID: 3300003324
• Scaffold ID: soilH2_10166691
• Source Dataset Name: Sugarcane bulk soil Sample H2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3464
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005789	Metagenome / Metatranscriptome	390	Y
F031074	Metagenome	183	Y
F032367	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
soilH2_101666914	F031074	N/A	MATVVKKLDLHVGELVEIDGRRYEVVPDKTGGLTIEPPITPISELYEKRGMKPASPEDFERLTADIPTDGEG*
soilH2_101666917	F005789	GGA	MATVVALDASPAKVLRSMRGPIVGARLAYPEVLHVEVRDSAGELWRLATQDAEWSPSDPAELVGNSIEDAEIDEDTGELRCKLSNGSLLDVKPAAQDSSDDPPNWELITPGGVMLEFGPGVRWQISSATAPASSRR*
soilH2_101666918	F032367	N/A	MTRKRDVKQFRQACKEVGLTVEERYAASEALHGEKESSGLQGHMTYGELLAWLRQWKQR*