Scaffold rootH1_10140979

Overview

Basic Information

• Taxon OID: 3300003323
• Scaffold ID: rootH1_10140979
• Source Dataset Name: Sugarcane root Sample H1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8914
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058015	Metagenome	135	Y
F080669	Metagenome	115	Y
F098799	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
rootH1_1014097914	F080669	GGAG	VKNTIVVMSSNREVEKQTKQTLQSLSSLGTVLLMETGSADVAFARCRALSWACDKLREHPGRDIVLMLDDDMEVPAETAQALADKARELGRACSAVYATLTAAVAASRWPGHPGLWLVGLGCVAIPRALLLDLEQRCEVFEISGRFYRAFTWSGPEGGHWISEDFRLSMNLGGVHLCPLGVGHIKKGALWPDDETLNQLAKEPSPAASSRTDLPAA*
rootH1_1014097915	F058015	GGAG	MTDSPIRLSPSGPVIGKGNAPGFGARLRLVDTSSPMGGSQVIPTTPDTISPDGFGAANPLVLSLDAPKETLHYRASLSLDVINTSTNVGGEVVLYLDVSIDGGATYTNQAKNAHVINSSITSAEARQMQLWLPLTLGGSLGIRDTSPPPSIKLRARVNQVTGSNALSVNSLETSDGATPVAALNGT
rootH1_101409798	F098799	GGAGG	MTAIGDLGCLGIDVDDWRKRNRVPLFPGRVNRWALVRTTRDNPTPDDLKSTLAAVFVKWFEGTVLDPALVFKGSTRSATADLITLEKVSKDRLTFDKPARRREELPGITPTLAPGEVVWLQVSFAYRGQQTDMPWPVRTGAAVQLTSSAQCPVGADWMLDSAQSPTEAAPPELSSTEKAGEVLDETAKSAADGAAHAIVSLLWLPLLLVGVGAVLVLRERRLS*