NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold rootH1_10082877

Scaffold rootH1_10082877


Overview

Basic Information
Taxon OID3300003323 Open in IMG/M
Scaffold IDrootH1_10082877 Open in IMG/M
Source Dataset NameSugarcane root Sample H1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2638
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location NameAyr, Queensland Australia
CoordinatesLat. (o)-19.733298Long. (o)147.17873Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085051Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
rootH1_100828773F085051N/AMSTARSADMSLAELLALQRQCHGPGRLLQNLGDGFLYQKNPFFRRVREAARARGVRFTLEDPGDYFAFPLVALDTVLKTRHVPYRANFSALSAFESARPNFFTLADLQKNRPLPNYLLHESAHVVAFHELFGRPEQVHAALSAPEKLVHIVLGEAFAMTAEYFAACAVSGPIHSWLFSINSYRHRTPARKAVGELVDRYGLELIVWLVLIAFLENNFFVERLPMKTLERALSLYPLGKAPPMSRADRLRLCGALRALMVMSPEFREDTARLFLTMHGHHRNIRRLLSAEPLDAIAADPQLPAQLTRLVRSLCD*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.