Scaffold rootL2_10086874

Overview

Basic Information

• Taxon OID: 3300003322
• Scaffold ID: rootL2_10086874
• Source Dataset Name: Sugarcane root Sample L2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9753
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058015	Metagenome	135	Y
F080669	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
rootL2_100868741	F080669	GGAGG	MKGTIVIVSSNRELEKQTRSTLQALAGAGAMLLMETGSADVAFARCRALSWACEKLRECPERDIVLMLDDDMEVPLETAQALVDKARELGRPCSAVYATLTEKVAAARWLERPGLWLVGLGCIAIPRRLLLELEERSESFEINGSLYTAFTWCGAENGAWVGEDFRLSMNLGGVHLCPLAVGHIKKGALWPDDETLVRLAMTSPLPTTRSLKEPATEPR*
rootL2_100868742	F058015	GGAGG	MPDSPIRLSPSGPIIGKGTSPGPGARLRLTEATSVMTGSLAIPPMADVIGPDGFDAPAELVLTLDAPKEHLHYRANLSLDVVNTSTNEGGEVVLYLDVSVDGGSTYTNHAKNTHLINTSPEQLEARPMQVWLPLTLGSALGVNDASHPPSIKLRARAQQVVGGCNVNSAATSGGSMPVTDLNGTIHLELEECL*