Scaffold rootL2_10000402

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold rootL2_10000402

Scaffold rootL2_10000402

Overview

Basic Information
Taxon OID	3300003322 Open in IMG/M
Scaffold ID	rootL2_10000402 Open in IMG/M
Source Dataset Name	Sugarcane root Sample L2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	36913
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (80.70%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Beephvirinae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location Name	Ayr, Queensland Australia
Coordinates	Lat. (^o)	-19.733298	Long. (^o)	147.17873	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F097652	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
rootL2_1000040240	F097652	AGGAG	VAHWLFTTPTVSEAPFAWNPLMERYRMDRAISVVEVSPHVYEQTRYDAYTNEIGAVNYPVNPNENDTDFYPAPATGLHYFRGGYEWIVDDTVKNDIIASGAADASNFSPAPGYGFGEGGFGEGGFGL*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.