Scaffold soilH1_10057947

Overview

Basic Information

• Taxon OID: 3300003321
• Scaffold ID: soilH1_10057947
• Source Dataset Name: Sugarcane bulk soil Sample H1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3896
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003586	Metagenome / Metatranscriptome	478	Y
F041924	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
soilH1_100579475	F003586	GGAGG	MAKRKLSKAERAERDARHAAVLANARRTRELAERAQAKLDAEGPRG*
soilH1_100579476	F041924	N/A	VRETLVTPDGLRWTVKRLIVPAGMRPLSRTEILDAAAPRRTVVEGMSRQVPDAVGAWTGPLPLGFLLVPLALPLVPLALLLRRLRMLPWTIEARTYPWGRRHPPIVLSYEIRGGDETRRAFRQLVEALARGDGSPVIEGAEKFGQAREPHSGSPVVGTTGPRQFGR*