Scaffold soilH1_10049891

Overview

Basic Information

• Taxon OID: 3300003321
• Scaffold ID: soilH1_10049891
• Source Dataset Name: Sugarcane bulk soil Sample H1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4083
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005150	Metagenome	410	Y
F051227	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
soilH1_100498915	F005150	AGG	MKTARYRKRCFDQIEEITTANKELTAEVECLRHQLETANQERTNREAQNQDLVGQLQRKEQEKTGKFSPYHNKCRTCVNLFFAVIAVMRV*
soilH1_100498917	F051227	AGGAG	MWKKRCQEMATGIVPILDLIDPALTEEELKMPQLGLVERCKKAWGWFQDFVKEAGEYTGAHVLSMVRAHYPLIDLKRLEAGYPKEVDPDKAEELRTTQLELSSKIIGDINLCGGGTAPVQGTPLTNQLEMPSAASQPTKPAVSTSQAPVGPSPSA*