Scaffold soilL2_10216561

Overview

Basic Information

• Taxon OID: 3300003319
• Scaffold ID: soilL2_10216561
• Source Dataset Name: Sugarcane bulk soil Sample L2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1021
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020239	Metagenome / Metatranscriptome	225	Y
F042256	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
soilL2_102165611	F042256	AGG	MLTPPSPDIKSKLLQLEEQLQLAMQEYPERIALDRLKFVLALAKFVRHQLDLEATVEQSIPGAVKTTRPTQQ*
soilL2_102165613	F020239	GAG	MRVSAAKVDCPTPPPARQTTPARTLHRACLILGGVAQLAAHLGVAEAALTSWLEGREEPPQMVFLAAVEI