Scaffold soilL2_10032540

Overview

Basic Information

• Taxon OID: 3300003319
• Scaffold ID: soilL2_10032540
• Source Dataset Name: Sugarcane bulk soil Sample L2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3619
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001576	Metagenome / Metatranscriptome	669	Y
F103346	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
soilL2_100325403	F001576	AGG	LKRTGFCHYALGITLTVVVCLTTTLAQKPTADTKPVPKLPYVVKIKTRPILNISIKAEKAKMSEVAQELSKQLKVPVFLGPERQNELLTIEFNELTLEPALQLMSPTVYVDYEIDTGSGAPPKALGIYFFDANQGEPPLTAVVNGSTQSMLIEGNTEDGVEPATDDEKKKEEEQPLRISFKDNLLSVKAKKQPLSLVLLKIGEELGIPVDIQATEVAVIDAEFSKLSVEDLVRQLSPHIRLYLRADLTRAERRALRLVLAEPLKATQ*
soilL2_100325405	F103346	AGAAG	MEAIQVSDRPAPQAFYSVAGRLLFIESFNTELRNLIVDLFAGWQLEPVALPDRPPDIQISFSCGEAPQAIPRDLEQFEIAEGGKCYASEAEIYLELAEIIGPVVHLQSGSSVSV