Scaffold D1draft_1001604

Overview

Basic Information

• Taxon OID: 3300003310
• Scaffold ID: D1draft_1001604
• Source Dataset Name: Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - L1-648F-DHS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21167
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Down-Flow Hanging Sponge Reactor → Down-Flow Hanging Sponge Reactor Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa

Source Dataset Sampling Location

• Location Name: USA: University of Illionis
• Coordinates
  • Lat. (^o): 40.114056
  • Long. (^o): -88.226756

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005058	Metagenome / Metatranscriptome	413	Y
F020414	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
D1draft_10016041	F005058	AGG	MKLLILLLLTFASPGFAKTHKDMFEAPCEKLWAALRDTLRNSGKYGIIGIDNSEMTASCNIGGFLTGKRINSVVLNAKGNSCEMQTQTSFSGLINHDYDDMKKRVQQSLDNLKSSPPETAATPGK
D1draft_100160418	F020414	AGTAG	MLAVKNILLSICFIVPVSIACGQDGAGQDIKAAGGSAKTAVVKTGAATGKVTVRGGKAMGRGLKWSAKKIALGTGSGMEKSGEALKSVGR*