Scaffold JGI25908J49247_10034196

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10034196
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1416
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007570	Metagenome	348	Y
F017612	Metagenome	239	N
F029676	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100341961	F007570	N/A	IKQYIKTFNDRRLKEEYNLYTSIEKPTILENYFKDFIKQEISTRGIGI*
JGI25908J49247_100341964	F029676	N/A	MGHLNKTFFSYMTTQDAWDEYLELIKDDEHFAEQWKDTDNDFEDWCEAYDIVLVDTRDRANQLEEAQLE*
JGI25908J49247_100341966	F017612	GGAGG	MSIPDVDIHIGDLYEITLMKYASGQLMIDGMIMTPDQALEHFKHLAVDEGFAVSTIENSAEELLYDLKEVEERKYQEYLEEKE*