Scaffold JGI25908J49247_10027700

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10027700
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1627
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F009402	Metagenome	318	Y
F010915	Metagenome / Metatranscriptome	297	Y
F068462	Metagenome / Metatranscriptome	124	N
F089938	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100277001	F010915	N/A	MKQKLPPHNMVVVVQVGLDLYTLSYVKYEECDIHQCIKYNLSSEDVSQFL
JGI25908J49247_100277002	F089938	N/A	MLNLDQAFTVQEFVRVNRTKRVWEIQDELYSLICILTKTKEEKKDETETAAA*
JGI25908J49247_100277003	F006546	N/A	MKWKYIGNRTGDAAKGEQYIVEADELTELYMKSVPYPQYVXVYVVQPPSPRNNWSKNNVGDIIKICNPYYEMATYSHPGFVPVKE*
JGI25908J49247_100277004	F068462	N/A	MSDITYTWKVNNVKCYKDLNGYQDYVYQTYWNCAAATLGPTGQAYDASFAGATPLGTGAATVSGYAFTPFADLTQNDVLNWIWLTLPSGHGKEYYEQKVSGELVYKINYQTEEPALPWNPPVPPPSGSL*
JGI25908J49247_100277005	F009402	N/A	EIYKIMKKLDEQFESAGFKYKQTHREDMFAIYERGYINTTKDPHYESIKIQSHNGMEIAGNKIPPSEYYPSSNSWGRHGYTCITKKEAYTRLDRMMKEDVINKEAANKKAERKNAK*