Scaffold JGI25908J49247_10025188

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10025188
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1735
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011750	Metagenome / Metatranscriptome	287	Y
F029747	Metagenome / Metatranscriptome	187	Y
F038235	Metagenome	166	N
F039047	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100251882	F039047	N/A	MKMKIEVDINDLVALKVALGNAERRINELMNDKPDWRNIYEFDKNSVEKAQKVLANMIANS*
JGI25908J49247_100251883	F029747	AGG	MKYTLMLDTDTCTSFSTYPHTREGLDKALDRVDKVRSRDGFKYANIVSDRDGEVFALDMSLAIN*
JGI25908J49247_100251884	F038235	N/A	MIREILAPFERVTYVREDGNQAIYKVFRPTKHLFINKKKDNGAVVGFRAWKMPDSGADERMGWRSFRFDRIASRKLTFV*
JGI25908J49247_100251885	F011750	N/A	MQKNWTPRSIRWTEAERQAKKIQSQNVRQIRWLFWRESQALREEIQKEISEKLIAKREAIE*