Scaffold JGI25908J49247_10024880

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10024880
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1749
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007163	Metagenome / Metatranscriptome	356	Y
F011276	Metagenome	292	Y
F075746	Metagenome	118	Y
F091317	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100248802	F075746	AGGA	MTIFIPVLFMCLNGNCEFMQGTTHYKIEAQCVASLDMQKQHMRNLVEKAAEQGTKGEITILEGTCIDAEVKTTQGRIT*
JGI25908J49247_100248803	F007163	GGA	MTLEDLEYIFEYQIEEGTEKLYFMLTDGDRHPLIQRHPAGDLVGLLPMLESFQYTGHNVMPRFKK*
JGI25908J49247_100248806	F091317	GGAG	MKVGGIDPAIAHNLELAKLTQQQTIKQQQLKVITDRQEEIKQMRPKDPGKGANIDEMV*
JGI25908J49247_100248807	F011276	AGG	MGNRGVIVSGGDVSTPYINNNSSNPVQGMIRLWGNDFQVFDGNAWIQLASSYATVSLDQDTQDLLQWARTQRQLEQNRATLIENNPALEKAYKAILRAEQNFDILSKFVEEDEPGAGSVLVGYNFNTP*