Scaffold JGI25908J49247_10023900

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10023900
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1797
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F007570	Metagenome	348	Y
F013404	Metagenome	271	Y
F021440	Metagenome / Metatranscriptome	219	Y
F073084	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100239003	F021440	GGAGG	MTKKPNHFAVENITFYAMDEDSEIITNNKGEVVMYQLKSGVRFKPLEYLCEDMTEEILEPIERKA*
JGI25908J49247_100239004	F007570	AGGA	MNEDITYIKKYIKTFNDRKLREEYRLYTSLEKPTILENYFKDFIKQEISTRGIGV*
JGI25908J49247_100239005	F003803	AGGGGG	MKKDKTLLRFXXYDGDREYTDYAIIDNKKLLTLNXKEIISIFFYDDKVDDXQXLSDGRAVRIESEIPITDIEAEKLERLSIAFLLEFKLMEVA*
JGI25908J49247_100239006	F013404	GGAGG	MDIRLENAIHELNDTFTKQKSIANKLVTEHQKLQEALADMLVNADEDCPKQYRTEHFRRALNDGYSLLKTIPSFRKKVK*
JGI25908J49247_100239007	F073084	AGAAGG	MTKQDKIIDWICNNYITNIKEKEWPNDSWHYVIEKAFDLHNMTLPELKEFKTELTKED*