Scaffold JGI25908J49247_10022749

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10022749
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1850
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008552	Metagenome	331	Y
F013087	Metagenome	274	Y
F033803	Metagenome	176	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100227492	F033803	N/A	MTINLRKNIARFIYIIDQTTNVDSRANILKELDLTENEFQELVSNLLQFSNSDNREFYCCNPEYHGFIETFKIISEKTETEFLI*
JGI25908J49247_100227493	F008552	N/A	MSVMIISFEASASEDTTLFGYFSMEYDPEFFSDIRENLTDIPKNKPLAFKLDTDNVKLLQGAFHTIRRIICVPDVEQQKFTYVFKRNFQAGTAKKFKYAKLHIDKDYFYFTGHHENLDGTKPVEFQSLNFDARFIDTIQNQYIKHQENMVN*
JGI25908J49247_100227494	F013087	N/A	MEPTVWIYFSKTGTGYELKGSDIISGFDAFIHSDGTYMVEYAFSDMKNSMHFFIYEWDNTQKKRRTIFEGYQRENILVNFAKNVDICHLVRQAIYKEYLMDNEELELEKNANS*