Scaffold JGI25908J49247_10019073

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10019073
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2057
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F032536	Metagenome / Metatranscriptome	179	Y
F062447	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100190733	F032536	N/A	MSQRKTFEELMRSFRFHKNPIINWFLTEVNYYSHTYLNVKWGLKNKFQRLIRGYSDSDCWNLPQAIARFILPRIKHLRKNYNSLANRNHLITIDGKVIQYKADQKNLELKEDSTGYVEGYIDKEINKPISLDASEYEYVLDEIIFALQMVVDEDSTDIGNLDRLYEVYPEGFDPIEDRQMFLTPQRDGTSLVEFENKDNIQPDYSKLNKAYERQRNGLILLGLYFKDLWD*
JGI25908J49247_100190734	F062447	AGGAGG	MKHKILWEKNSRIKGIVPKEQIIEKTQTHKFPCGAVTIRMSNVNDSNPTAVAYFHGKEAKGTSWNGSNYTYAENKLMVSLTKEGNGYNFNGSIIDFFSLQDLKEVLDSVRETLNKL*
JGI25908J49247_100190735	F024040	AGAAG	MILKMMKMMETIILHTNMNFFVSGHNWFAKVSLDKDVKKSDRYTEATTRAIESLLDQEEKEGVDIKVLDYDDYGXGLITLTYDEKHSKKEGEHRVMLTSNILANAGRWDDYKTIKDYEEKCKEEGL*