Scaffold JGI25908J49247_10018137

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10018137
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2117
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F027777	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100181372	F027777	AGGA	MSEEMPAFWHQEPAKKKLPNETTDEWVVRVFGAFPDTEFDSRNDFRFLNLPKTQKENAEGFGVFDDGQHKQ*
JGI25908J49247_100181374	F005702	GGA	VIFGLVIFVGLFILQGLRLLGKHIDQQNYERRKFYLFVAAELDKMDKIVAEGNQPKEPKQPELVLPSKNWVGRN*
JGI25908J49247_100181375	F005846	N/A	MTSFPLPARPQASAVPAWHIEFKKETAIEGKANGWRGLFHQKTGIGYNRHGKIASNHNLMVERLSNAGIKAPYIDCEIMGMRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDIPNNKLLRFVQLAHHKINSIWEEMNYQNNKAGEVIWEGFVMKALDDGKYPYITNPSYCSPAWQKQRIRW*