Scaffold JGI25908J49247_10015927

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10015927
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2293
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F045754	Metagenome / Metatranscriptome	152	N
F049625	Metagenome	146	Y
F073554	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100159272	F045754	GAG	MNIDPDKPWPFPSHFGDTAEDSKLIADCLELLQDFTAFQLRGEIYYGYLDVKALKVIEELREAQDNEAKPST*
JGI25908J49247_100159273	F073554	AGGA	MSIEMMNNDDDFDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVSEAVLHKVHSGYVVAKENDEHPLLW*
JGI25908J49247_100159276	F049625	GGA	MLSDIDLKDWIEQPSIPLYDVPRETPIKTPMGMLWFKHIDGMYSLNYDGNGNPVHMKAWVKVNPYRRKSDE*
JGI25908J49247_100159277	F026266	AGGA	MTIETITFHFVGALEDSFAIVDVQCQIDEDGDCRDLDSVMYQGLDLLQVISHSQWEHLEWQGSKKYKAERDTQAGIDFENSL*