Scaffold JGI25908J49247_10014318

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10014318
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2430
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015860	Metagenome	251	Y
F018705	Metagenome / Metatranscriptome	233	Y
F036215	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100143182	F036215	AGGA	VSLADELACPQCGRVHPDAKLITLPDGTSVGSYSMEYRAYTEAKWVLDTLPVTVNRRRKKTPQISRREYILGVQDRRGQAAANELAANVTKLWKASK*
JGI25908J49247_100143184	F015860	GGAGG	MHVSYVKLFRDDEGAVWDTQEANGEIRNFQHQIELLKHALEREMNTVADLRELLNTVRRIAYELNEEILKDTDAKTQE*
JGI25908J49247_100143187	F018705	N/A	MKPKLKPFLMRLHPATRELLDKAALDQGRSVSSLIDQCVREQLQPRYGDLQPRLQRFLSGVRQP*