Scaffold JGI25908J49247

Basic Information
Taxon OID	3300003277 Open in IMG/M
Scaffold ID	JGI25908J49247_10014161 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003277 Open in IMG/M

Scaffold ID

JGI25908J49247_10014161 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2445
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2445

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001799	Metagenome / Metatranscriptome	632	Y
F039986	Metagenome	162	Y
F102704	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100141611	F039986	N/A	LGRNPTQTEYVSAMANLGYNPYDASVLGTAGKLSANVAALESDPFAGRYANVNPYGTFDLATMTTKLDGTLPNISKNVSGNVVQFVNPVTQRPIVTSFENGKLVVKDGVDTLTGEQAQAAINLALGTGALTGTEYKNLTGALANAKSMDDVYKAFGTPQAVAALDPNYGFQLGVGKTLEQAQANSTGVQALVDQIAAENGGRLPANFSVAALAQAKNIPFQFGQGVYDKAYTNDAGGLITTLATSPTVMYNAKTPNAPFNFNPANIYQAPIVAGQMRELFPSFGESKRLAQGLINERPTTQSIVNMIQGAPIKPMMNNVAQTPTGVNTAMPTGLQTNMPVGGQPSLSNILSMIAR*
JGI25908J49247_100141612	F102704	AGG	MNYQELRSLVGGDNPQAATYQDIVSGIQSQYRPQTRFAPTTSLLDMIGSQLPDQPRIGYGSLLQAQPMVLPTPMTGIKNPDAIASLDSGVFNLANLDTGKITDNSELGKTLVYNNDFTKDVYGTTGITGDTTNRGLFGTNVTGTDVANVAGTIAPIAALAGNSDLVKTAIALNLIGSAADIRTEADVINLGSKIAMLAAGPAGNVLAAGLGLATDNTPMTVNALLGLTNPTLSLVNSIAGNLTGYSLGDIVNGLLNAPEGSLSEYGLLGATNLAKTIDESRKRAGIAYDTMDANTLRVLAELGDQEAIATINSMSGGGSTYNPMTDLSTARGNSYFNLFTPVGGTAKPKDEETLGISLI*
JGI25908J49247_100141613	F001799	AGGA	MTDKAIMAQWAKNLLNDDFFKEVLNNLKNEQISVIINTSAEECDRREDAYRHIKSIELITGHLEGIASETVIREKKWKIL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25908J49247_10014161

Overview

Ecosystem & Geography

Associated Families

Sequences