Scaffold JGI25908J49247_10013272

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10013272
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2535
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035768	Metagenome / Metatranscriptome	171	Y
F039639	Metagenome / Metatranscriptome	163	Y
F061859	Metagenome / Metatranscriptome	131	Y
F062765	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100132723	F062765	GGA	MEWYRARGLTQKQTKTATQDTMFYNTGDTYTTEDITTNYSCGRIDIRGIPNEPYGDELGVPPMLSSDWHAFGNWLWDIQTISVWTLADLITAYEQHNPKITWDTHDR*
JGI25908J49247_100132725	F035768	AGGA	MKITIEDRLLAAYTAQRLRLRDREDEDYRARVEVKAFERIILDRVHRNLRLGLDKGTNVDLEV*
JGI25908J49247_100132726	F061859	GGA	MTIEITLIILGLCLAVCYVVLEYQKLAKPPYQEPVKPDMAEQWKAATKADTLDNIDNWNAKVGDKIWWKQPEETLEPTVLNPQAAWPFPHTKP*
JGI25908J49247_100132728	F039639	AGGAG	MNIDREFVKWFYEAEYPEQGSNRRQVYSTTQNSQNINVIDYWMREAFKAGAQAATNSYEVNALEQFEAFNINRNYPL*