Scaffold JGI25908J49247_10013268

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10013268
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2535
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054636	Metagenome / Metatranscriptome	139	Y
F057368	Metagenome / Metatranscriptome	136	N
F059435	Metagenome / Metatranscriptome	134	Y
F085616	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100132681	F085616	N/A	MSFTKTQEQKQERWARIAELEVLNKVMTPAQTISARNKQKKATLLAEKAENLINSLTQSARVSKAPMGTXPLTVEDKAPVPDANTFLPNRKKVDQLAVTANQIIDDILKG*
JGI25908J49247_100132682	F057368	N/A	MTKQTCIDELIETFKDRLEYLICTEDYDSASAIYSEFLVNGIEPEYSEYVWLFVPNLSLK
JGI25908J49247_100132687	F054636	N/A	MKLEFDEFEKDLLIETVHHRLDTDKVLIINNSLKGELTELLRKIEEDEYL*
JGI25908J49247_100132688	F059435	AGAAG	MNTYNIEVKGVSILDQIPQNDLQENLKLIRGLVWTSGGNDKDIEVILNKSKSPCNN*