Scaffold JGI25908J49247_10012514

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10012514
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2619
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F003067	Metagenome / Metatranscriptome	509	Y
F059776	Metagenome / Metatranscriptome	133	N
F063488	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100125145	F002269	AGCAGG	MNRKQLEAAAYSYGRAALASVAALYLAGITDPKVLANAFLAGLIGPVLKAIQPNEKQYGIGSKK*
JGI25908J49247_100125146	F003067	AGGA	MSTAQALLSIALAICALIGVGLGLIRHXVRHYXSELLPDNNGNHNLRGRVERIEQRVDKIYEXLLEERLAR*
JGI25908J49247_100125147	F059776	AGG	MLIDLAVILFTVLMVGMFMLAAYRTGYREGHGDGYLRGKNIAKALKEANK*
JGI25908J49247_100125148	F063488	GAGG	MSNFLEGYEDVNARITRARLEYPGLRLVAYIEDISLKDGYILVRAEAYKNYDDEKP