Scaffold JGI25908J49247_10011340

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10011340
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2764
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100113404	F039000	AGGA	MTKETDATDKDIEQVMDDAQTLLNFCGNTFAQPHQAWFACLVSSAVLTAELDVPLEKFLEGFEHAYSDAMKTKIKGASYDH*
JGI25908J49247_100113405	F031377	AGGGGG	MIINADNYIPVNRTDKRLTPFNTGKVQIGLLYQPRPPELTGSEEVIQAMLLNKPSMYRQPSVWPVVLGSAIVAVLLMFLTR*
JGI25908J49247_100113406	F028744	GAGG	MQNLHEFLYECDELGLRLRCLFEYEPEEIGSVEPISGMKLEPDYPEVWTLVSVFLPNSTVDLSGVLHPDVIFQVQMDAATYFEGTREGNSYD*