Scaffold JGI25908J49247_10011081

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10011081
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2798
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F006935	Metagenome	361	Y
F040624	Metagenome	161	N
F047676	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100110813	F006547	AGGA	MKWLLILLLLPFSISAQVYDTTYQMVYYQKSLIKKGKIELYVYSSYDIGWADESGMGITLTIPNKRKKKKHKH*
JGI25908J49247_100110814	F047676	N/A	MELIITXIVLIXIWCIAFMVGNKQGTNRIINQIKKDGGYYDMEYTSSAYPILDPTSSVNNDTMGTIGSKPKTQTDYQREHKVEQEKGDIDFMHNWIQEKSGKKDPISQKRKPKSIKDWEDEFDIGGNS*
JGI25908J49247_100110815	F040624	AGGA	MKSEKVMALYKRKKELQEQIIYWEKFQGVNWLGKWGRSVRLEVLKEKFAKIEKQITKSKNKKDENK*
JGI25908J49247_100110817	F006935	N/A	MDKRYAKQIIEWAEDAKETLTIRKEIIIDENVTDEKLGNIIRMMYNAKVETQNETILKTKQNLEK*