Scaffold JGI25908J49247_10010730

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10010730
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2844
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039943	Metagenome / Metatranscriptome	162	Y
F065418	Metagenome	127	N
F067397	Metagenome / Metatranscriptome	125	N
F070857	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100107301	F039943	N/A	MKEVSKGSSLNEHRQEKEYGWKPISSKKKPVKKSSEYIYAFIGVVIGLTMGILTSIFMYKDSQRCNLLLEENKLLKEMLYYKDINPMETP*
JGI25908J49247_100107302	F067397	N/A	MGKMKELYNELLQANNGEIPQEATIADLARMNDLKIYEWREYERSQNHVKKPKNEGSIKGEQS*
JGI25908J49247_100107303	F065418	N/A	MEYTIDDILKECNTLVYEFQNSPKKRLRPLLDKRNYLIAILYYKFGYTEEKISTIFNMSRTTVSVSKLHTYSLLDYGDSVFKENVXDYLINYPYAFPSFXNKYKKDIQITISVDTKIIKKLRAYRDIVNEKTIAKAVKRLVTNGLNLWEK*
JGI25908J49247_100107306	F070857	AGAAG	MKVICIDADXXPKNVPIEEWVKEGDTYTVTRIVRMGLQKXTYGYLLKEVQLSSRSFPYELYDATRFLPIELLSMMKEEKKEEVIIEEACLELI*