Scaffold JGI25908J49247_10010640

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10010640
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2859
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F036603	Metagenome	169	N
F042894	Metagenome	157	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100106403	F001923	N/A	MSPPPPIDNEATQSLVKDGLVASILGGLAMTARLLLSQEPVTPGWVLRRISAAAITAALVGYAITDHISSPGLRMGVVGAAGYAAPEVMDYVLKYLKARGDAEVAKVTKKPNAKKKPSKRGK*
JGI25908J49247_100106404	F036603	N/A	MAAVSVAYIADLILSSFANSSTMALLITDAGTKSDDLGLERQLTSATMGLKACRDLGWALAVGCVGVGVAVFLRFRRANAS*
JGI25908J49247_100106406	F042894	N/A	MPDPLSMSQDMLASPAHVIRGLSYQIAYSRDRVLQGDWTEKYARQRIAMCAAVAEENLRDSHNCLAVSIYANLTTGCRALFTWTYVDRNGEKDSGSVHPTMDGR*