Scaffold JGI25908J49247_10008526

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10008526
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3233
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010997	Metagenome	296	Y
F012966	Metagenome / Metatranscriptome	275	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100085261	F010997	AGG	MTTLENLLSEHNAIIQKIIVEAKKEAIAITSSAPNINVGIGTSSSNINSNQKLDLFSHISTNFDNLIKEKKDKEMLTPYANPYNWPRNTNCWAKSLDLTGYAACIVPLGGVGGGTLITKKHVLLSNHVPYSNSPFMIFFVNNNNVSLVYNVMKTKRVANTDILIGELDKEVDSSLKIYNVLPANYIKYFDKQINFPLLYSDQERKALIGENGLINTTYGSTNTLINMSKDINRAQYFEPVIGGDSGNIVST
JGI25908J49247_100085262	F012966	N/A	MKKLVLVLAALFAASSATAEDASSLTFDAGYNNQYIVNGVSRAEGTAYAGFAAIKSLKYADVYVSGVLLPKDGVDQSHWTVGTGKGIKTFEWLTLRLDATATRHQAGGFGIKNSTEFGVKLEAQNKWVTPYVRGAYDINLEQAGAGVGVYRTFALPFGFNATPAAELVKFERYDAVTAKLNVSRPIGNFVPYLEVGVIDNNFSTAKYRFATEELTAEVLYSAGVKYTF*